This seems to happen to me quite a bit so since it just now happened (again) I thought I'd post this picture. Sometimes when punching in on a track where I'm recording in a take folder Logic decides to not put the new audio file in the take folder. You can see by the screenshot what I'm talking about. I'm assuming this happens to everybody and it's just another "take folder quirk" that one has to live with. It seems to behave better if I punch in earlier in the track, but, the closer to the end of the folder I punch in at, the more likely this situation appears.